C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FYVE, RhoGEF and PH domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549499 FGD6-002 ENSG00000180263 9606 - 12:95092828-95217379 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungOvaryTestisENST00000549499
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Ovary Testis
ENST00000549499 1.448±0.00 0.994±0.00 4.443±0.00 2.940±0.00 0.363±0.00 0.909±0.00 3.003±0.00 1.240±0.33 0.903±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005XD CIL_0005XD_0002 CGP 12:95020229-95217482
CIL_0000Y0 CIL_0000Y0_0002 CGP 12:95076749-95302790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020208 Fgd6-001 protein_coding Mus_musculus 0 1869
ENSMUST00000141143 Fgd6-002 processed_transcript Mus_musculus 0 220
ENSMUST00000125535 Fgd6-003 retained_intron Mus_musculus 3e-23 115

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