C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FYVE, RhoGEF and PH domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020208 Fgd6-001 ENSMUSG00000020021 10090 + 10:94036001-94145339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020208
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020208 0.645±0.04 0.552±0.13 0.640±0.14 1.467±0.91 0.849±0.39 1.937±0.72 0.665±0.09 0.475±0.25 2.004±0.76 2.331±0.82 0.515±0.11 1.175±0.55 7.125±2.52 1.665±0.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066949 fgd6-001 protein_coding Danio_rerio 0 422
ENST00000343958 FGD6-001 protein_coding Homo_sapiens 0 2737
ENST00000451107 FGD6-003 nonsense_mediated_decay Homo_sapiens 0 2121
ENST00000546711 FGD6-004 protein_coding Homo_sapiens 0 2407
ENST00000549499 FGD6-002 protein_coding Homo_sapiens 0 1869
ENST00000551521 FGD6-005 protein_coding Homo_sapiens 0 848

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