C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000551295 CNTN1-001 ENSG00000018236 9606 + 12:40692552-41072418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverMuscleOvaryPlacentaENST00000551295
Transcript ID Brain Colon Liver Muscle Ovary Placenta
ENST00000551295 20.640±0.00 1.177±0.00 13.738±0.00 0.061±0.00 3.085±1.97 0.066±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0002 CGP 12:40692442-41574590

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 TAS Notch signaling pathway
GO:0007411 TAS axon guidance
GO:0010628 IEA positive regulation of gene expression
GO:0010765 IEA positive regulation of sodium ion transport
GO:0010976 IEA positive regulation of neuron projection development
GO:0016020 TAS membrane
GO:0021549 IEA cerebellum development
GO:0030246 IEA carbohydrate binding
GO:0031175 IEA neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169825 Cntn1-201 protein_coding Mus_musculus 0 3808
ENSMUST00000000109 Cntn1-001 protein_coding Mus_musculus 0 3788
ENSMUST00000068378 Cntn1-002 protein_coding Mus_musculus 0 3746
ENSMUST00000141187 Cntn1-003 retained_intron Mus_musculus 0 1068

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