C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033008 Psma1-001 ENSMUSG00000030751 10090 - 7:114264606-114276118 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033008 71.157±1.98 28.962±3.95 86.195±16.36 61.103±30.22 46.725±11.10 46.819±1.81 67.937±5.77 62.979±5.20 94.459±28.88 56.890±5.31 41.975±1.72 31.039±19.76 99.216±37.07 21.567±7.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PO CIL_0003PO_0002 CGP 7:114215559-114276118
CIL_0003ZT CIL_0003ZT_0002 CGP 7:114264606-114539251

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IDA proteasome complex
GO:0001530 IDA lipopolysaccharide binding
GO:0002376 IEA immune system process
GO:0002862 IMP negative regulation of inflammatory response to antigenic stimulus
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005839 IDA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396394 PSMA1-001 protein_coding Homo_sapiens 0 1345
ENST00000418988 PSMA1-002 protein_coding Homo_sapiens 0 1123
ENST00000524606 PSMA1-021 processed_transcript Homo_sapiens 0 569
ENST00000526443 PSMA1-014 retained_intron Homo_sapiens 0 475
ENST00000527632 PSMA1-020 retained_intron Homo_sapiens 0 483
ENST00000528307 PSMA1-003 retained_intron Homo_sapiens 0 479
ENST00000529524 PSMA1-018 retained_intron Homo_sapiens 2e-34 150
ENST00000530457 PSMA1-004 protein_coding Homo_sapiens 0 1286
ENST00000531023 PSMA1-007 retained_intron Homo_sapiens 0 350
ENST00000531156 PSMA1-016 retained_intron Homo_sapiens 0 475
ENST00000532256 PSMA1-010 protein_coding Homo_sapiens 1e-30 137
ENST00000533068 PSMA1-009 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000533331 PSMA1-012 retained_intron Homo_sapiens 0 359
ENST00000555531 PSMA1-001 nonsense_mediated_decay Homo_sapiens 0 566

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