C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555759 SYNE3-002 ENSG00000176438 9606 - 14:95437802-95467856 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverENST00000555759
Transcript ID Colon Liver
ENST00000555759 0.429±0.00 1.239±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0001 VISTA 14:95070077-95673144
CIL_00099M CIL_00099M_0001 VISTA 14:95131820-95732594
CIL_0008Z4 CIL_0008Z4_0001 VISTA 14:95131888-95732401
CIL_0007F2 CIL_0007F2_0001 CGP 14:95407266-95544724

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095439 Syne3-202 protein_coding Mus_musculus 0 905
ENSMUST00000109927 Syne3-203 protein_coding Mus_musculus 0 839
ENSMUST00000067005 Syne3-201 protein_coding Mus_musculus 0 839

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