C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: APEX nuclease (multifunctional DNA repair enzyme) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555839 APEX1-016 ENSG00000100823 9606 + 14:20455239-20457366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonENST00000555839
Transcript ID Adipose Colon
ENST00000555839 23.254±0.00 20.225±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z3 CIL_0004Z3_0002 CGP 14:20446411-20457772
CIL_0001O8 CIL_0001O8_0001 CGP 14:20455191-20461612

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004518 IEA nuclease activity
GO:0004519 IEA endonuclease activity
GO:0005634 IDA nucleus
GO:0005813 IDA centrosome
GO:0006281 IEA DNA repair
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128395 Apex1-003 protein_coding Mus_musculus 0 682
ENSMUST00000136753 Apex1-004 protein_coding Mus_musculus 0 492
ENSMUST00000049411 Apex1-001 protein_coding Mus_musculus 0 492

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