C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557538 HIF1A-004 ENSG00000100644 9606 + 14:61697622-61747771 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungOvaryENST00000557538
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Ovary
ENST00000557538 12.396±0.00 13.179±0.00 9.227±0.00 3.713±0.00 5.621±0.00 9.939±0.00 7.855±0.00 9.156±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S0 CIL_0000S0_0001 CGP 14:61695513-61796428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110461 Hif1a-003 protein_coding Mus_musculus 0 3025
ENSMUST00000021530 Hif1a-001 protein_coding Mus_musculus 0 1960
ENSMUST00000110464 Hif1a-002 protein_coding Mus_musculus 0 976
ENSMUST00000157041 Hif1a-005 processed_transcript Mus_musculus 0 466
ENSMUST00000149740 Hif1a-004 retained_intron Mus_musculus 0 340

Loading