C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021606 Atxn3-001 ENSMUSG00000021189 10090 - 12:101918901-101958246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021606
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021606 3.740±0.93 0.594±0.18 6.261±0.45 3.205±0.75 2.470±1.16 1.955±0.64 1.405±0.13 2.767±1.01 3.865±1.55 4.537±1.00 0.832±0.33 1.863±1.65 2.760±0.77 4.159±1.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0001012 IEA RNA polymerase II regulatory region DNA binding
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004407 IEA histone deacetylase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005759 IDA mitochondrial matrix
GO:0005829 ISS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006511 IMP ubiquitin-dependent protein catabolic process
GO:0006515 IMP misfolded or incompletely synthesized protein catabolic process
GO:0008242 IEA omega peptidase activity
GO:0010810 IMP:ISS regulation of cell-substrate adhesion
GO:0016579 IEA protein deubiquitination
GO:0030036 ISS actin cytoskeleton organization
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031966 IDA mitochondrial membrane
GO:0034605 IMP cellular response to heat
GO:0035520 IDA monoubiquitinated protein deubiquitination
GO:0035640 IMP exploration behavior
GO:0042405 IDA nuclear inclusion body
GO:0042802 ISS identical protein binding
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045104 ISS intermediate filament cytoskeleton organization
GO:0051117 ISS ATPase binding
GO:0061578 ISS Lys63-specific deubiquitinase activity
GO:0070536 ISS protein K63-linked deubiquitination
GO:0070932 IEA histone H3 deacetylation
GO:0071108 ISS protein K48-linked deubiquitination
GO:0071218 IMP cellular response to misfolded protein
GO:1990380 ISS Lys48-specific deubiquitinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340660 ATXN3-003 protein_coding Homo_sapiens 0 959
ENST00000359366 ATXN3-002 nonsense_mediated_decay Homo_sapiens 0 756
ENST00000393287 ATXN3-201 protein_coding Homo_sapiens 0 665
ENST00000429774 ATXN3-202 protein_coding Homo_sapiens 0 896
ENST00000454964 ATXN3-006 retained_intron Homo_sapiens 0 300
ENST00000502250 ATXN3-004 protein_coding Homo_sapiens 0 756
ENST00000503767 ATXN3-005 protein_coding Homo_sapiens 0 893
ENST00000504047 ATXN3-011 processed_transcript Homo_sapiens 0 532
ENST00000506466 ATXN3-008 protein_coding Homo_sapiens 0 490
ENST00000507965 ATXN3-010 retained_intron Homo_sapiens 0 520
ENST00000511362 ATXN3-012 processed_transcript Homo_sapiens 0 604
ENST00000515746 ATXN3-007 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000523800 CTD-2544L4.1-001 processed_pseudogene Homo_sapiens 5e-21 106
ENST00000526245 ATXN3-013 processed_transcript Homo_sapiens 7.00649e-45 183
ENST00000526872 ATXN3-014 protein_coding Homo_sapiens 0 532
ENST00000532032 ATXN3-015 protein_coding Homo_sapiens 0 1158
ENST00000545170 ATXN3-203 protein_coding Homo_sapiens 0 1195
ENST00000553287 ATXN3-044 processed_transcript Homo_sapiens 0 651
ENST00000553309 ATXN3-045 processed_transcript Homo_sapiens 0 1171
ENST00000553488 ATXN3-024 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000553491 ATXN3-032 protein_coding Homo_sapiens 0 569
ENST00000553498 ATXN3-048 processed_transcript Homo_sapiens 0 558
ENST00000553570 ATXN3-039 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000553686 ATXN3-033 processed_transcript Homo_sapiens 0 560
ENST00000554040 ATXN3-025 processed_transcript Homo_sapiens 0 405
ENST00000554214 ATXN3-034 processed_transcript Homo_sapiens 0 651
ENST00000554350 ATXN3-043 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000554491 ATXN3-046 processed_transcript Homo_sapiens 0 1170
ENST00000554592 ATXN3-026 protein_coding Homo_sapiens 0 1160
ENST00000554672 ATXN3-019 protein_coding Homo_sapiens 0 660
ENST00000554673 ATXN3-022 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000554994 ATXN3-040 nonsense_mediated_decay Homo_sapiens 0 617
ENST00000555381 ATXN3-017 protein_coding Homo_sapiens 0 800
ENST00000555816 ATXN3-021 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000555958 ATXN3-038 processed_transcript Homo_sapiens 0 854
ENST00000556082 ATXN3-049 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000556220 ATXN3-029 protein_coding Homo_sapiens 0 569
ENST00000556274 ATXN3-036 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000556288 ATXN3-035 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000556315 ATXN3-027 nonsense_mediated_decay Homo_sapiens 0 660
ENST00000556339 ATXN3-037 processed_transcript Homo_sapiens 0 617
ENST00000556374 ATXN3-031 nonsense_mediated_decay Homo_sapiens 0 1086
ENST00000556608 RP11-10A2.1-001 processed_pseudogene Homo_sapiens 0.00000000000001 84
ENST00000556644 ATXN3-023 processed_transcript Homo_sapiens 0 388
ENST00000556671 ATXN3-042 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000556898 ATXN3-028 nonsense_mediated_decay Homo_sapiens 0 1042
ENST00000556958 ATXN3-030 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000557030 ATXN3-047 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000557311 ATXN3-020 protein_coding Homo_sapiens 0 438
ENST00000558190 ATXN3-001 protein_coding Homo_sapiens 0 1295
ENST00000617719 ATXN3-204 protein_coding Homo_sapiens 0 1170
ENST00000620536 ATXN3-205 protein_coding Homo_sapiens 0 1199
ENST00000621269 ATXN3-206 protein_coding Homo_sapiens 0 1182

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