C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558506 EIF5-003 ENSG00000100664 9606 + 14:103334949-103343228 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000558506
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000558506 2.237±0.00 16.905±14.02 6.037±0.00 1.852±0.00 1.440±0.00 8.988±0.00 5.116±0.00 7.700±0.00 6.468±0.64 13.586±5.73 12.215±0.00 9.496±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AI CIL_0001AI_0002 CGP 14:103123442-103345025
CIL_00016S CIL_00016S_0001 CGP 14:103333544-103503831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003743 IEA:NAS translation initiation factor activity
GO:0003924 TAS GTPase activity
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005829 NAS cytosol
GO:0005886 IDA plasma membrane
GO:0006184 TAS GTP catabolic process
GO:0006412 TAS translation
GO:0006413 IEA:NAS translational initiation
GO:0006446 TAS regulation of translational initiation
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0010467 TAS gene expression
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166123 Eif5-202 protein_coding Mus_musculus 0 2717
ENSMUST00000050993 Eif5-201 protein_coding Mus_musculus 0 2680
ENSDART00000019476 eif5-001 protein_coding Danio_rerio 0 628
ENSDART00000137766 eif5-002 protein_coding Danio_rerio 0 531
ENSDART00000152342 eif5-006 protein_coding Danio_rerio 0 477
ENSDART00000152533 eif5-004 protein_coding Danio_rerio 0 462
ENSMUST00000118393 Gm11833-001 processed_pseudogene Mus_musculus 0 394
ENSDART00000134333 eif5-003 retained_intron Danio_rerio 0 211

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