C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 111
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559209 RNF111-002 ENSG00000157450 9606 + 15:58987952-59097054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000559209
Transcript ID Ovary Placenta Testis
ENST00000559209 1.966±0.06 1.941±0.00 3.129±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024E CIL_00024E_0001 CGP 15:58865175-59097419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007389 IEA pattern specification process
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016874 IEA ligase activity
GO:0030511 IEA positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030579 IEA ubiquitin-dependent SMAD protein catabolic process
GO:0031398 IEA positive regulation of protein ubiquitination
GO:0032184 IDA SUMO polymer binding
GO:0043234 IEA protein complex
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0046332 IEA SMAD binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113595 Rnf111-202 protein_coding Mus_musculus 0 2582
ENSMUST00000034739 Rnf111-201 protein_coding Mus_musculus 0 2582

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