C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger 111
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034739 Rnf111-201 ENSMUSG00000032217 10090 - 9:70425429-70503725 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034739 9.152±3.81 13.469±7.32 4.994±2.18 13.690±0.94 13.529±7.39 10.317±6.18 3.083±0.87 6.753±2.09 4.342±1.61 14.139±0.29 0.591±0.23 18.292±12.96 6.994±4.14 5.666±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024E CIL_00024E_0002 CGP 9:70425429-70592237

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0007389 IMP pattern specification process
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030511 IDA positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030579 IDA ubiquitin-dependent SMAD protein catabolic process
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0032184 ISS SUMO polymer binding
GO:0043234 IDA protein complex
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046332 IEA SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000348370 RNF111-001 protein_coding Homo_sapiens 0 3949
ENST00000557998 RNF111-003 protein_coding Homo_sapiens 0 4104
ENST00000558977 RNF111-008 retained_intron Homo_sapiens 0 616
ENST00000559077 RNF111-009 retained_intron Homo_sapiens 0 385
ENST00000559160 RNF111-006 protein_coding Homo_sapiens 0 381
ENST00000559209 RNF111-002 protein_coding Homo_sapiens 0 2582
ENST00000559592 RNF111-011 protein_coding Homo_sapiens 0 745
ENST00000559757 RNF111-007 protein_coding Homo_sapiens 0 442
ENST00000560080 RNF111-012 processed_transcript Homo_sapiens 0 673
ENST00000560216 RNF111-010 retained_intron Homo_sapiens 0 625
ENST00000560952 RNF111-005 retained_intron Homo_sapiens 0 1419
ENST00000561186 RNF111-004 protein_coding Homo_sapiens 0 2560

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