C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SECIS binding protein 2-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053699 Secisbp2l-001 ENSMUSG00000035093 10090 - 2:125736986-125782870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053699
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053699 9.163±1.03 11.749±1.42 6.549±1.59 10.234±4.71 6.999±1.81 8.130±2.43 2.810±0.53 8.389±0.21 3.535±1.98 20.585±1.01 2.078±0.86 7.685±3.03 8.930±3.72 2.081±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GC CIL_0008GC_0002 VISTA 2:125191395-125793910
CIL_0004N9 CIL_0004N9_0002 CGP 2:125673095-125782870
CIL_0002PL CIL_0002PL_0002 CGP 2:125736986-125859139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083378 SECISBP2L-203 protein_coding Danio_rerio 0.0000000001 75
ENSDART00000122411 SECISBP2L-202 protein_coding Danio_rerio 0.0000000001 75
ENST00000261847 SECISBP2L-004 protein_coding Homo_sapiens 0 2113
ENST00000380927 SECISBP2L-003 protein_coding Homo_sapiens 0 2440
ENST00000557923 SECISBP2L-005 retained_intron Homo_sapiens 0 272
ENST00000557940 SECISBP2L-011 retained_intron Homo_sapiens 0 420
ENST00000559122 SECISBP2L-009 processed_transcript Homo_sapiens 0 289
ENST00000559424 SECISBP2L-002 protein_coding Homo_sapiens 0 715
ENST00000559471 SECISBP2L-001 protein_coding Homo_sapiens 0 3559

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