C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SMAD family member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559931 SMAD6-003 ENSG00000137834 9606 + 15:66711676-66781313 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalOvaryTestisENST00000559931
Transcript ID Adrenal Ovary Testis
ENST00000559931 3.157±0.00 6.065±0.00 5.286±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q7 CIL_0008Q7_0001 VISTA 15:66378983-66980203
CIL_0008R9 CIL_0008R9_0001 VISTA 15:66606636-67207796
CIL_000471 CIL_000471_0002 CGP 15:66702228-67195195

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041029 Smad6-001 protein_coding Mus_musculus 0 512
ENSMUST00000144323 Smad6-002 processed_transcript Mus_musculus 2.8026e-45 185
ENSDART00000125131 smad6a-203 protein_coding Danio_rerio 3e-31 139
ENSDART00000100120 smad6a-202 protein_coding Danio_rerio 3e-31 139
ENSDART00000075213 smad6a-201 protein_coding Danio_rerio 3e-31 139

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