C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560007 CTD-2651B20.5-001 ENSG00000235390 9606 - 15:45321077-45321692 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000560007
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000560007 0.251±0.00 0.855±0.00 0.195±0.00 0.377±0.00 0.373±0.00 0.211±0.00 0.121±0.06 0.705±0.00 0.224±0.00 0.309±0.00 0.049±0.00 0.077±0.00 0.138±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ND CIL_0004ND_0001 CGP 15:45252230-45402327

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 296
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 296
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 296
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 291
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 279
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 267
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 267
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 267
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 263
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 263
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 244
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 215
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 215
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 9.80909e-45 183
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 2.00386e-43 180
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000120815 Gm14069-001 unprocessed_pseudogene Mus_musculus 6e-33 145
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 1e-24 117
ENSMUST00000146544 Golga2-011 processed_transcript Mus_musculus 0.00004 53

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