C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TGFB-induced factor homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560025 TGIF2-003 ENSG00000118707 9606 + 20:36574672-36591429 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000560025
Transcript ID Kidney
ENST00000560025 1.519±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RT CIL_0006RT_0002 CGP 20:36541484-36593950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006355 IEA:NAS regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081335 Tgif2-001 protein_coding Mus_musculus 0 894
ENSMUST00000061746 Gm7148-001 processed_pseudogene Mus_musculus 0 869
ENSMUST00000121213 Gm12605-001 unprocessed_pseudogene Mus_musculus 0 750
ENSMUST00000176281 Tgif2-006 processed_transcript Mus_musculus 0 547
ENSMUST00000073352 Tgif2-002 protein_coding Mus_musculus 0 407
ENSMUST00000150078 Tgif2-003 nonsense_mediated_decay Mus_musculus 0 268

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