C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Integrin beta {ECO:0000256|RuleBase:RU000633}
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560629 ITGB3-001 ENSG00000259753 9606 + 17:47253897-47344292 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyPlacentaTestisENST00000560629
Transcript ID Kidney Placenta Testis
ENST00000560629 0.809±0.00 0.636±0.00 3.642±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0001 VISTA 17:46991162-47592148
CIL_0004WN CIL_0004WN_0001 CGP 17:47200446-47311816
CIL_0006XZ CIL_0006XZ_0001 CGP 17:47253897-47441312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021028 Itgb3-001 protein_coding Mus_musculus 0 2532
ENSMUST00000127140 Itgb3-002 processed_transcript Mus_musculus 0 1692

Loading