C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006XZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000259753-ENSG00000178852 CGP 9606 17:47253897-47441312
GeneTranscriptPositionBiotype
ENSG00000178852 (EFCAB13)
EF-hand calcium binding domain 13 		ENST00000331493 (EFCAB13-001) 47323981-47441312 protein_coding
ENST00000517310 (EFCAB13-002) 47323776-47374639 protein_coding
ENST00000517484 (EFCAB13-003) 47324025-47430710 protein_coding
ENST00000518081 (EFCAB13-011) 47329851-47340088 processed_transcript
ENST00000518170 (EFCAB13-006) 47323290-47328371 protein_coding
ENST00000518646 (EFCAB13-010) 47328048-47341451 retained_intron
ENST00000519772 (EFCAB13-009) 47324025-47335326 protein_coding
ENST00000520776 (EFCAB13-004) 47326339-47396021 retained_intron
ENST00000520802 (EFCAB13-008) 47323961-47342027 processed_transcript
ENST00000522326 (EFCAB13-012) 47377654-47394099 retained_intron
ENST00000523285 (EFCAB13-007) 47323528-47335276 protein_coding
ENST00000523842 (EFCAB13-014) 47377816-47414975 protein_coding
ENST00000523978 (EFCAB13-013) 47369616-47374638 processed_transcript
ENSG00000259207 (ITGB3)
integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 		ENST00000559488 (ITGB3-001) 47253846-47311816 protein_coding
ENST00000571680 (ITGB3-004) 47253853-47291487 protein_coding
ENST00000573377 (ITGB3-005) 47291053-47292171 nonsense_mediated_decay
ENSG00000259753 (ITGB3)
Integrin beta {ECO:0000256|RuleBase:RU000633} 		ENST00000560629 (ITGB3-001) 47253897-47344292 nonsense_mediated_decay
ENSG00000276790 (RP11-290H9.5)
 ENST00000619646 (RP11-290H9.5-001) 47279526-47280047 antisense
CIL_0006XZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020689-ENSMUSG00000040838 CGP 10090 11:104608000-104753962
GeneTranscriptPositionBiotype
ENSMUSG00000020689 (Itgb3)
integrin beta 3 		ENSMUST00000021028 (Itgb3-001) 104608000-104670476 protein_coding
ENSMUST00000127140 (Itgb3-002) 104637389-104669813 processed_transcript
ENSMUSG00000040838 (Gm11639)
predicted gene 11639 		ENSMUST00000148007 (Gm11639-001) 104685707-104753962 protein_coding
ENSMUST00000175713 (Gm11639-002) 104704358-104724500 processed_transcript
ENSMUSG00000083748 (Gm11662)
predicted gene 11662 		ENSMUST00000121389 (Gm11662-001) 104679105-104680655 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006XZ_0001ENSG00000178852ENST00000331493ENST00000517310ENST00000517484ENST00000518081ENST00000518170ENST00000518646ENST00000519772ENST00000520776ENST00000520802ENST00000522326ENST00000523285ENST00000523842ENST00000523978ENSG00000259207ENST00000559488ENST00000571680ENST00000573377ENSG00000259753ENST00000560629ENSG00000276790ENST00000619646CIL_0006XZ_0002ENSMUSG00000020689ENSMUST00000021028ENSMUST00000127140ENSMUSG00000040838ENSMUST00000148007ENSMUST00000175713ENSMUSG00000083748ENSMUST00000121389
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006XZ_0001ENSG00000178852ENST00000331493ENST00000517310ENST00000517484ENST00000520776ENST00000522326ENSG00000259207ENST00000559488ENST00000571680ENSG00000259753ENST00000560629ENSG00000276790ENST00000619646CIL_0006XZ_0002ENSMUSG00000020689ENSMUST00000021028ENSMUST00000127140ENSMUSG00000040838ENSMUST00000148007ENSMUST00000175713ENSMUSG00000083748ENSMUST00000121389
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000178852 ENST00000331493 N/A 0.328±0.00 N/A 0.165±0.00 0.893±0.00 N/A 0.270±0.00 N/A 0.905±0.00 N/A N/A N/A 0.156±0.00 N/A
ENST00000517310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.879±0.00
ENST00000517484 N/A N/A N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A 1.035±0.00 N/A 2.028±0.00
ENST00000518081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520776 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.614±0.00 N/A N/A N/A N/A
ENST00000520802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.585±0.00
ENST00000523285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259207 ENST00000559488 N/A 1.476±0.00 1.869±0.00 0.654±0.00 2.440±0.00 N/A N/A N/A 2.463±0.00 0.823±0.00 0.181±0.08 2.470±0.00 1.907±0.28 N/A
ENST00000571680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.457±0.00 N/A N/A N/A
ENST00000573377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259753 ENST00000560629 N/A N/A N/A N/A N/A N/A N/A 0.809±0.00 N/A N/A N/A N/A 0.636±0.00 3.642±0.00
ENSG00000276790 ENST00000619646 N/A 0.107±0.00 N/A 0.319±0.00 N/A N/A 0.066±0.00 0.037±0.00 N/A N/A N/A 0.130±0.04 0.068±0.00 0.486±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020689 ENSMUST00000021028 8.190±6.14 2.886±0.27 28.986±4.43 0.344±0.22 6.456±1.72 6.915±0.74 1.253±0.14 0.442±0.17 5.859±5.16 8.081±1.18 0.147±0.04 22.538±8.21 30.047±15.49 0.272±0.16
ENSMUST00000127140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.220±0.00 N/A N/A
ENSMUSG00000040838 ENSMUST00000148007 0.024±0.01 N/A 0.002±0.00 0.014±0.01 N/A N/A N/A 0.012±0.00 0.004±0.00 N/A N/A 0.100±0.08 0.013±0.00 0.293±0.00
ENSMUST00000175713 0.190±0.00 N/A N/A 0.099±0.04 N/A N/A N/A N/A 0.030±0.00 N/A N/A 0.185±0.01 0.111±0.00 N/A
ENSMUSG00000083748 ENSMUST00000121389 0.116±0.10 N/A 0.509±0.00 0.066±0.00 0.217±0.08 0.152±0.00 0.032±0.00 N/A 0.168±0.08 0.090±0.03 N/A 0.572±0.38 0.062±0.03 0.265±0.14

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