C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004WN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198336-ENSG00000259207 CGP 9606 17:47200446-47311816
GeneTranscriptPositionBiotype
ENSG00000198336 (MYL4)
myosin, light chain 4, alkali; atrial, embryonic 		ENST00000354968 (MYL4-201) 47209062-47223678 protein_coding
ENST00000393450 (MYL4-001) 47209348-47223679 protein_coding
ENST00000536623 (MYL4-004) 47209066-47223038 protein_coding
ENST00000570671 (MYL4-006) 47220030-47223477 protein_coding
ENST00000570772 (MYL4-008) 47209063-47221851 nonsense_mediated_decay
ENST00000571981 (MYL4-007) 47200446-47223672 nonsense_mediated_decay
ENST00000572303 (MYL4-005) 47209400-47221796 protein_coding
ENST00000572316 (MYL4-002) 47209035-47223658 protein_coding
ENST00000573747 (MYL4-009) 47209342-47223057 nonsense_mediated_decay
ENST00000576874 (MYL4-003) 47209066-47222409 protein_coding
ENSG00000259207 (ITGB3)
integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 		ENST00000559488 (ITGB3-001) 47253846-47311816 protein_coding
ENST00000571680 (ITGB3-004) 47253853-47291487 protein_coding
ENST00000573377 (ITGB3-005) 47291053-47292171 nonsense_mediated_decay
ENSG00000259753 (ITGB3)
Integrin beta {ECO:0000256|RuleBase:RU000633} 		ENST00000560629 (ITGB3-001) 47253897-47344292 nonsense_mediated_decay
ENSG00000276790 (RP11-290H9.5)
 ENST00000619646 (RP11-290H9.5-001) 47279526-47280047 antisense
CIL_0004WN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000061086-ENSMUSG00000020689 CGP 10090 11:104550663-104670476
GeneTranscriptPositionBiotype
ENSMUSG00000020689 (Itgb3)
integrin beta 3 		ENSMUST00000021028 (Itgb3-001) 104608000-104670476 protein_coding
ENSMUST00000127140 (Itgb3-002) 104637389-104669813 processed_transcript
ENSMUSG00000061086 (Myl4)
myosin, light polypeptide 4 		ENSMUST00000018800 (Myl4-001) 104550663-104587215 protein_coding
ENSMUST00000106956 (Myl4-004) 104577281-104587215 protein_coding
ENSMUST00000106957 (Myl4-003) 104576985-104587215 protein_coding
ENSMUST00000123074 (Myl4-006) 104580325-104587209 retained_intron
ENSMUST00000130588 (Myl4-005) 104577017-104585014 nonsense_mediated_decay
ENSMUST00000136244 (Myl4-008) 104584964-104595753 protein_coding
ENSMUST00000153761 (Myl4-007) 104575446-104585748 protein_coding
ENSMUST00000155271 (Myl4-002) 104582039-104586347 retained_intron
ENSMUSG00000081588 (Gm11661)
predicted gene 11661 		ENSMUST00000121761 (Gm11661-001) 104565400-104566726 transcribed_processed_pseudogene
ENSMUSG00000082706 (Gm11663)
predicted gene 11663 		ENSMUST00000117888 (Gm11663-001) 104571268-104571557 processed_pseudogene
ENSMUSG00000086222 (Gm11665)
predicted gene 11665 		ENSMUST00000148136 (Gm11665-001) 104556789-104557777 antisense
ENSMUSG00000086932 (Gm22000)
predicted gene 22000 		ENSMUST00000153087 (Gm22000-001) 104557922-104565661 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WN_0001ENSG00000198336ENST00000354968ENST00000393450ENST00000536623ENST00000570671ENST00000570772ENST00000571981ENST00000572303ENST00000572316ENST00000573747ENST00000576874ENSG00000259207ENST00000559488ENST00000571680ENST00000573377ENSG00000259753ENST00000560629ENSG00000276790ENST00000619646CIL_0004WN_0002ENSMUSG00000020689ENSMUST00000021028ENSMUST00000127140ENSMUSG00000061086ENSMUST00000018800ENSMUST00000106956ENSMUST00000106957ENSMUST00000123074ENSMUST00000130588ENSMUST00000136244ENSMUST00000153761ENSMUST00000155271ENSMUSG00000081588ENSMUST00000121761ENSMUSG00000082706ENSMUST00000117888ENSMUSG00000086222ENSMUST00000148136ENSMUSG00000086932ENSMUST00000153087
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WN_0001ENSG00000198336ENST00000354968ENST00000393450ENST00000536623ENST00000570671ENST00000570772ENST00000572316ENST00000573747ENST00000576874ENSG00000259207ENST00000559488ENST00000571680ENSG00000259753ENST00000560629ENSG00000276790ENST00000619646CIL_0004WN_0002ENSMUSG00000020689ENSMUST00000021028ENSMUST00000127140ENSMUSG00000061086ENSMUST00000018800ENSMUST00000106956ENSMUST00000106957ENSMUST00000123074ENSMUST00000130588ENSMUST00000153761ENSMUST00000155271ENSMUSG00000081588ENSMUST00000121761ENSMUSG00000082706ENSMUST00000117888ENSMUSG00000086222ENSMUST00000148136ENSMUSG00000086932ENSMUST00000153087
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000198336 ENST00000354968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.00
ENST00000393450 N/A 1.268±0.00 N/A N/A 0.714±0.00 0.683±0.00 58.960±50.28 N/A N/A N/A N/A N/A 2.799±2.49 1.148±0.00
ENST00000536623 0.267±0.00 N/A N/A N/A 0.672±0.00 N/A N/A N/A 0.285±0.00 N/A N/A 0.180±0.00 2.470±0.47 N/A
ENST00000570671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A
ENST00000570772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.949±0.00
ENST00000571981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572316 0.863±0.00 0.686±0.00 N/A N/A N/A 0.670±0.00 N/A 0.316±0.00 N/A 5.815±0.00 1.408±0.00 N/A 4.121±0.00 2.742±0.00
ENST00000573747 N/A N/A N/A 0.121±0.00 0.754±0.00 0.266±0.00 75.366±0.00 N/A N/A 5.302±0.00 0.322±0.00 N/A 0.582±0.00 N/A
ENST00000576874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.449±0.00 2.354±0.00 2.106±0.00
ENSG00000259207 ENST00000559488 N/A 1.476±0.00 1.869±0.00 0.654±0.00 2.440±0.00 N/A N/A N/A 2.463±0.00 0.823±0.00 0.181±0.08 2.470±0.00 1.907±0.28 N/A
ENST00000571680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.457±0.00 N/A N/A N/A
ENST00000573377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259753 ENST00000560629 N/A N/A N/A N/A N/A N/A N/A 0.809±0.00 N/A N/A N/A N/A 0.636±0.00 3.642±0.00
ENSG00000276790 ENST00000619646 N/A 0.107±0.00 N/A 0.319±0.00 N/A N/A 0.066±0.00 0.037±0.00 N/A N/A N/A 0.130±0.04 0.068±0.00 0.486±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020689 ENSMUST00000021028 8.190±6.14 2.886±0.27 28.986±4.43 0.344±0.22 6.456±1.72 6.915±0.74 1.253±0.14 0.442±0.17 5.859±5.16 8.081±1.18 0.147±0.04 22.538±8.21 30.047±15.49 0.272±0.16
ENSMUST00000127140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.220±0.00 N/A N/A
ENSMUSG00000061086 ENSMUST00000018800 N/A N/A N/A N/A 0.274±0.00 N/A N/A 0.263±0.00 0.122±0.00 N/A N/A 2.116±0.98 N/A 17.395±5.85
ENSMUST00000106956 3.307±0.28 N/A 34.372±0.26 0.773±0.09 1.047±0.52 1.687±0.35 573.537±82.89 0.379±0.00 2.098±2.69 79.419±5.52 6.534±1.27 1.162±0.13 34.853±45.14 N/A
ENSMUST00000106957 3.342±0.95 N/A N/A N/A 0.830±0.51 0.217±0.00 N/A 0.287±0.00 0.652±0.35 N/A 2.212±0.71 N/A 26.370±21.00 N/A
ENSMUST00000123074 5.257±3.36 0.444±0.33 8.292±0.00 5.357±6.84 1.085±0.43 0.659±0.15 N/A 0.692±0.38 0.713±0.92 22.156±0.00 N/A 4.633±1.46 13.357±6.21 7.907±1.34
ENSMUST00000130588 N/A 0.285±0.04 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A 1.094±0.00 N/A N/A
ENSMUST00000136244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153761 N/A 0.378±0.10 N/A 19.801±0.00 0.604±0.19 0.732±0.02 N/A 0.435±0.16 0.236±0.12 N/A N/A 2.480±1.62 29.455±8.88 25.600±0.00
ENSMUST00000155271 0.519±0.04 0.107±0.05 1.558±0.00 0.098±0.02 0.266±0.08 0.107±0.03 11.167±0.00 0.067±0.03 0.056±0.03 N/A N/A 0.390±0.12 1.478±0.92 N/A
ENSMUSG00000081588 ENSMUST00000121761 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000082706 ENSMUST00000117888 0.263±0.00 N/A N/A N/A N/A 0.311±0.01 N/A N/A 0.065±0.01 N/A N/A 0.650±0.33 0.428±0.00 0.242±0.00
ENSMUSG00000086222 ENSMUST00000148136 0.324±0.00 N/A 0.395±0.11 N/A 0.604±0.26 0.572±0.00 0.826±0.45 N/A N/A N/A 0.920±0.27 0.578±0.30 0.985±0.73 N/A
ENSMUSG00000086932 ENSMUST00000153087 N/A 0.431±0.31 N/A N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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