C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004WN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198336-ENSG00000259207 CGP 9606 17:47200446-47311816
GeneTranscriptPositionBiotype
ENSG00000198336 (MYL4)
myosin, light chain 4, alkali; atrial, embryonic 		ENST00000354968 (MYL4-201) 47209062-47223678 protein_coding
ENST00000393450 (MYL4-001) 47209348-47223679 protein_coding
ENST00000536623 (MYL4-004) 47209066-47223038 protein_coding
ENST00000570671 (MYL4-006) 47220030-47223477 protein_coding
ENST00000570772 (MYL4-008) 47209063-47221851 nonsense_mediated_decay
ENST00000571981 (MYL4-007) 47200446-47223672 nonsense_mediated_decay
ENST00000572303 (MYL4-005) 47209400-47221796 protein_coding
ENST00000572316 (MYL4-002) 47209035-47223658 protein_coding
ENST00000573747 (MYL4-009) 47209342-47223057 nonsense_mediated_decay
ENST00000576874 (MYL4-003) 47209066-47222409 protein_coding
ENSG00000259207 (ITGB3)
integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 		ENST00000559488 (ITGB3-001) 47253846-47311816 protein_coding
ENST00000571680 (ITGB3-004) 47253853-47291487 protein_coding
ENST00000573377 (ITGB3-005) 47291053-47292171 nonsense_mediated_decay
ENSG00000259753 (ITGB3)
Integrin beta {ECO:0000256|RuleBase:RU000633} 		ENST00000560629 (ITGB3-001) 47253897-47344292 nonsense_mediated_decay
ENSG00000276790 (RP11-290H9.5)
 ENST00000619646 (RP11-290H9.5-001) 47279526-47280047 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0004WN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000061086-ENSMUSG00000020689 CGP 10090 11:104550663-104670476
GeneTranscriptPositionBiotype
ENSMUSG00000020689 (Itgb3)
integrin beta 3 		ENSMUST00000021028 (Itgb3-001) 104608000-104670476 protein_coding
ENSMUST00000127140 (Itgb3-002) 104637389-104669813 processed_transcript
ENSMUSG00000061086 (Myl4)
myosin, light polypeptide 4 		ENSMUST00000018800 (Myl4-001) 104550663-104587215 protein_coding
ENSMUST00000106956 (Myl4-004) 104577281-104587215 protein_coding
ENSMUST00000106957 (Myl4-003) 104576985-104587215 protein_coding
ENSMUST00000123074 (Myl4-006) 104580325-104587209 retained_intron
ENSMUST00000130588 (Myl4-005) 104577017-104585014 nonsense_mediated_decay
ENSMUST00000136244 (Myl4-008) 104584964-104595753 protein_coding
ENSMUST00000153761 (Myl4-007) 104575446-104585748 protein_coding
ENSMUST00000155271 (Myl4-002) 104582039-104586347 retained_intron
ENSMUSG00000081588 (Gm11661)
predicted gene 11661 		ENSMUST00000121761 (Gm11661-001) 104565400-104566726 transcribed_processed_pseudogene
ENSMUSG00000082706 (Gm11663)
predicted gene 11663 		ENSMUST00000117888 (Gm11663-001) 104571268-104571557 processed_pseudogene
ENSMUSG00000086222 (Gm11665)
predicted gene 11665 		ENSMUST00000148136 (Gm11665-001) 104556789-104557777 antisense
ENSMUSG00000086932 (Gm22000)
predicted gene 22000 		ENSMUST00000153087 (Gm22000-001) 104557922-104565661 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WN_0001ENSG00000198336ENST00000354968ENST00000393450ENST00000536623ENST00000570671ENST00000570772ENST00000571981ENST00000572303ENST00000572316ENST00000573747ENST00000576874ENSG00000259207ENST00000559488ENST00000571680ENST00000573377ENSG00000259753ENST00000560629ENSG00000276790ENST00000619646CIL_0004WN_0002ENSMUSG00000020689ENSMUST00000021028ENSMUST00000127140ENSMUSG00000061086ENSMUST00000018800ENSMUST00000106956ENSMUST00000106957ENSMUST00000123074ENSMUST00000130588ENSMUST00000136244ENSMUST00000153761ENSMUST00000155271ENSMUSG00000081588ENSMUST00000121761ENSMUSG00000082706ENSMUST00000117888ENSMUSG00000086222ENSMUST00000148136ENSMUSG00000086932ENSMUST00000153087
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WN_0001ENSG00000198336ENST00000354968ENST00000393450ENST00000536623ENST00000570671ENST00000570772ENST00000572316ENST00000573747ENST00000576874ENSG00000259207ENST00000559488ENST00000571680ENSG00000259753ENST00000560629ENSG00000276790ENST00000619646CIL_0004WN_0002ENSMUSG00000020689ENSMUST00000021028ENSMUST00000127140ENSMUSG00000061086ENSMUST00000018800ENSMUST00000106956ENSMUST00000106957ENSMUST00000123074ENSMUST00000130588ENSMUST00000153761ENSMUST00000155271ENSMUSG00000081588ENSMUST00000121761ENSMUSG00000082706ENSMUST00000117888ENSMUSG00000086222ENSMUST00000148136ENSMUSG00000086932ENSMUST00000153087
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000198336 ENST00000354968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.00
ENST00000393450 N/A 1.268±0.00 N/A N/A 0.714±0.00 0.683±0.00 58.960±50.28 N/A N/A N/A N/A N/A 2.799±2.49 1.148±0.00
ENST00000536623 0.267±0.00 N/A N/A N/A 0.672±0.00 N/A N/A N/A 0.285±0.00 N/A N/A 0.180±0.00 2.470±0.47 N/A
ENST00000570671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A
ENST00000570772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.949±0.00
ENST00000571981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572316 0.863±0.00 0.686±0.00 N/A N/A N/A 0.670±0.00 N/A 0.316±0.00 N/A 5.815±0.00 1.408±0.00 N/A 4.121±0.00 2.742±0.00
ENST00000573747 N/A N/A N/A 0.121±0.00 0.754±0.00 0.266±0.00 75.366±0.00 N/A N/A 5.302±0.00 0.322±0.00 N/A 0.582±0.00 N/A
ENST00000576874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.449±0.00 2.354±0.00 2.106±0.00
ENSG00000259207 ENST00000559488 N/A 1.476±0.00 1.869±0.00 0.654±0.00 2.440±0.00 N/A N/A N/A 2.463±0.00 0.823±0.00 0.181±0.08 2.470±0.00 1.907±0.28 N/A
ENST00000571680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.457±0.00 N/A N/A N/A
ENST00000573377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259753 ENST00000560629 N/A N/A N/A N/A N/A N/A N/A 0.809±0.00 N/A N/A N/A N/A 0.636±0.00 3.642±0.00
ENSG00000276790 ENST00000619646 N/A 0.107±0.00 N/A 0.319±0.00 N/A N/A 0.066±0.00 0.037±0.00 N/A N/A N/A 0.130±0.04 0.068±0.00 0.486±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020689 ENSMUST00000021028 8.190±6.14 2.886±0.27 28.986±4.43 0.344±0.22 6.456±1.72 6.915±0.74 1.253±0.14 0.442±0.17 5.859±5.16 8.081±1.18 0.147±0.04 22.538±8.21 30.047±15.49 0.272±0.16
ENSMUST00000127140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.220±0.00 N/A N/A
ENSMUSG00000061086 ENSMUST00000018800 N/A N/A N/A N/A 0.274±0.00 N/A N/A 0.263±0.00 0.122±0.00 N/A N/A 2.116±0.98 N/A 17.395±5.85
ENSMUST00000106956 3.307±0.28 N/A 34.372±0.26 0.773±0.09 1.047±0.52 1.687±0.35 573.537±82.89 0.379±0.00 2.098±2.69 79.419±5.52 6.534±1.27 1.162±0.13 34.853±45.14 N/A
ENSMUST00000106957 3.342±0.95 N/A N/A N/A 0.830±0.51 0.217±0.00 N/A 0.287±0.00 0.652±0.35 N/A 2.212±0.71 N/A 26.370±21.00 N/A
ENSMUST00000123074 5.257±3.36 0.444±0.33 8.292±0.00 5.357±6.84 1.085±0.43 0.659±0.15 N/A 0.692±0.38 0.713±0.92 22.156±0.00 N/A 4.633±1.46 13.357±6.21 7.907±1.34
ENSMUST00000130588 N/A 0.285±0.04 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A 1.094±0.00 N/A N/A
ENSMUST00000136244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153761 N/A 0.378±0.10 N/A 19.801±0.00 0.604±0.19 0.732±0.02 N/A 0.435±0.16 0.236±0.12 N/A N/A 2.480±1.62 29.455±8.88 25.600±0.00
ENSMUST00000155271 0.519±0.04 0.107±0.05 1.558±0.00 0.098±0.02 0.266±0.08 0.107±0.03 11.167±0.00 0.067±0.03 0.056±0.03 N/A N/A 0.390±0.12 1.478±0.92 N/A
ENSMUSG00000081588 ENSMUST00000121761 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000082706 ENSMUST00000117888 0.263±0.00 N/A N/A N/A N/A 0.311±0.01 N/A N/A 0.065±0.01 N/A N/A 0.650±0.33 0.428±0.00 0.242±0.00
ENSMUSG00000086222 ENSMUST00000148136 0.324±0.00 N/A 0.395±0.11 N/A 0.604±0.26 0.572±0.00 0.826±0.45 N/A N/A N/A 0.920±0.27 0.578±0.30 0.985±0.73 N/A
ENSMUSG00000086932 ENSMUST00000153087 N/A 0.431±0.31 N/A N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading