C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beta-2-microglobulin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561424 B2M-013 ENSG00000166710 9606 + 15:44711509-44718851 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000561424
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000561424 56.731±0.00 67.752±0.00 419.327±0.00 274.356±0.00 75.116±0.00 310.585±0.00 173.178±0.00 543.797±0.00 73.335±0.00 612.292±206.45 1105.340±105.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DK CIL_0004DK_0001 CGP 15:44665732-44718877
CIL_0004DL CIL_0004DL_0001 CGP 15:44711477-44767829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001895 IEP retina homeostasis
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0002480 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030670 TAS phagocytic vesicle membrane
GO:0031901 TAS early endosome membrane
GO:0031905 TAS early endosome lumen
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042612 IEA MHC class I protein complex
GO:0042802 IPI identical protein binding
GO:0045087 TAS innate immune response
GO:0050690 TAS regulation of defense response to virus by virus
GO:0050776 TAS regulation of immune response
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

No Homologs available.

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