C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin alpha 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562220 PCDHA10-003 ENSG00000250120 9606 + 5:140855883-140868240 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLungMuscleOvaryENST00000562220
Transcript ID Adipose Breast Colon Kidney Lung Muscle Ovary
ENST00000562220 0.100±0.00 0.450±0.22 0.070±0.00 0.227±0.21 0.467±0.00 0.019±0.00 0.173±0.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115659 Pcdha10-207 protein_coding Mus_musculus 0 1956
ENSMUST00000070797 Pcdha10-204 protein_coding Mus_musculus 0 998
ENSMUST00000115657 Pcdha10-205 protein_coding Mus_musculus 0 953
ENSMUST00000115658 Pcdha10-206 protein_coding Mus_musculus 0 902
ENSMUST00000115662 Pcdha10-209 protein_coding Mus_musculus 0 885
ENSMUST00000115661 Pcdha10-208 protein_coding Mus_musculus 0 863
ENSMUST00000047614 Pcdha10-203 protein_coding Mus_musculus 0 481
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000005 60

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