C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562492 IRF8-009 ENSG00000140968 9606 + 16:85914043-85921371 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENST00000562492
Transcript ID Liver Muscle
ENST00000562492 2.089±0.00 0.120±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IY CIL_0000IY_0001 CGP 16:85798633-85922609
CIL_0000YG CIL_0000YG_0002 CGP 16:85898803-86515418

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162001 Irf8-003 protein_coding Mus_musculus 0 750
ENSMUST00000047737 Irf8-001 protein_coding Mus_musculus 0 750
ENSMUST00000160388 Irf8-006 retained_intron Mus_musculus 0 490
ENSMUST00000160594 Irf8-007 processed_transcript Mus_musculus 0 431
ENSMUST00000162658 Irf8-005 protein_coding Mus_musculus 1.4013e-45 187

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