C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptosomal-associated protein, 23kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563333 SNAP23-016 ENSG00000092531 9606 + 15:42527943-42531651 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleOvaryENST00000563333
Transcript ID Brain Heart Kidney Liver Muscle Ovary
ENST00000563333 3.597±0.00 2.460±0.00 10.189±0.00 3.933±0.00 1.107±0.00 6.551±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PK CIL_0005PK_0001 CGP 15:42412823-42545356
CIL_0005PJ CIL_0005PJ_0001 CGP 15:42491233-42548802

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028743 Snap23-003 protein_coding Mus_musculus 0 440
ENSMUST00000110711 Snap23-001 protein_coding Mus_musculus 0 440
ENSMUST00000116437 Snap23-002 protein_coding Mus_musculus 0 436
ENSMUST00000130759 Snap23-008 processed_transcript Mus_musculus 0 331
ENSMUST00000150611 Snap23-009 nonsense_mediated_decay Mus_musculus 0 331
ENSMUST00000142278 Snap23-005 protein_coding Mus_musculus 0 276
ENSMUST00000137144 Snap23-004 retained_intron Mus_musculus 4.00001e-41 172

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