C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RPGRIP1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563746 RPGRIP1L-007 ENSG00000103494 9606 - 16:53601781-53703847 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000563746
Transcript ID Adipose Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000563746 0.176±0.00 0.346±0.00 0.182±0.00 0.164±0.06 0.153±0.13 0.596±0.17 0.165±0.00 0.475±0.23 0.135±0.05 2.321±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007PV CIL_0007PV_0001 VISTA 16:53229142-53830543
CIL_0008IZ CIL_0008IZ_0001 VISTA 16:53244122-53845073
CIL_0007S1 CIL_0007S1_0001 VISTA 16:53392404-53993644
CIL_0007S0 CIL_0007S0_0001 VISTA 16:53426386-54027245
CIL_0005OC CIL_0005OC_0001 CGP 16:53491040-53703938
CIL_0007SA CIL_0007SA_0001 VISTA 16:53595301-54195912
CIL_0005OE CIL_0005OE_0001 CGP 16:53597683-54121941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047783 Rpgrip1l-001 protein_coding Mus_musculus 0 3415
ENSMUST00000139113 Rpgrip1l-002 nonsense_mediated_decay Mus_musculus 0 2017
ENSMUST00000136198 Rpgrip1l-004 retained_intron Mus_musculus 0 861
ENSMUST00000132757 Rpgrip1l-003 protein_coding Mus_musculus 0 342

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