C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109614 Chd9-202 ENSMUSG00000056608 10090 + 8:90828835-91054508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109614 1.482±0.58 2.212±0.52 2.950±0.03 1.582±0.76 1.970±1.00 2.535±0.49 0.973±0.47 1.428±0.31 0.977±0.47 1.823±0.54 0.649±0.20 2.712±1.39 0.885±0.16 0.223±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00077Q CIL_00077Q_0002 CGP 8:90247040-91054508
CIL_0009C3 CIL_0009C3_0002 VISTA 8:90438604-91042411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000027807 chd9-201 protein_coding Danio_rerio 0 1469
ENST00000219084 CHD9-019 retained_intron Homo_sapiens 0 5555
ENST00000398510 CHD9-020 protein_coding Homo_sapiens 0 8682
ENST00000423902 CHD7-001 protein_coding Homo_sapiens 0 1040
ENST00000447540 CHD9-201 protein_coding Homo_sapiens 0 8737
ENST00000525508 CHD7-003 protein_coding Homo_sapiens 5e-32 145
ENST00000562806 CHD9-016 retained_intron Homo_sapiens 0 466
ENST00000564255 CHD9-006 retained_intron Homo_sapiens 0 3478
ENST00000564641 CHD9-018 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000564845 CHD9-003 protein_coding Homo_sapiens 0 8299
ENST00000565119 CHD9-015 processed_transcript Homo_sapiens 0 693
ENST00000565442 CHD9-012 protein_coding Homo_sapiens 0 540
ENST00000565803 CHD9-004 protein_coding Homo_sapiens 0 4228
ENST00000565832 CHD9-002 protein_coding Homo_sapiens 0 1999
ENST00000566029 CHD9-001 protein_coding Homo_sapiens 0 8301
ENST00000569225 CHD9-005 retained_intron Homo_sapiens 0 1574
ENST00000615216 CHD9-202 protein_coding Homo_sapiens 0 6809
ENST00000622617 CHD9-203 protein_coding Homo_sapiens 0 1421
ENST00000624244 AC007906.1-201 protein_coding Homo_sapiens 0 577

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