C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000566127 SMG1P2-001 ENSG00000205534 9606 - 16:29527568-29594966 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000566127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000566127 0.039±0.00 0.064±0.00 0.136±0.00 0.027±0.01 0.035±0.02 0.085±0.05 0.055±0.02 0.118±0.00 0.041±0.02 0.061±0.00 0.046±0.00 0.063±0.06 0.026±0.01 0.043±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032891 Smg1-001 protein_coding Mus_musculus 0 5291
ENSMUST00000179331 Smg1-005 protein_coding Mus_musculus 0 4680
ENSMUST00000180009 Smg1-003 retained_intron Mus_musculus 0 1808
ENSMUST00000179047 Smg1-002 protein_coding Mus_musculus 0 1421
ENSMUST00000179847 Smg1-004 retained_intron Mus_musculus 0 1136

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