C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptosomal-associated protein, 23kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000566327 SNAP23-009 ENSG00000092531 9606 + 15:42495644-42529804 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonOvaryPlacentaTestisENST00000566327
Transcript ID Adipose Colon Ovary Placenta Testis
ENST00000566327 25.064±0.00 23.615±0.00 18.335±0.00 56.672±0.00 24.556±2.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PK CIL_0005PK_0001 CGP 15:42412823-42545356
CIL_0005PJ CIL_0005PJ_0001 CGP 15:42491233-42548802

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028743 Snap23-003 protein_coding Mus_musculus 0 625
ENSMUST00000110711 Snap23-001 protein_coding Mus_musculus 0 625
ENSMUST00000142278 Snap23-005 protein_coding Mus_musculus 0 573
ENSMUST00000130759 Snap23-008 processed_transcript Mus_musculus 0 326
ENSMUST00000150611 Snap23-009 nonsense_mediated_decay Mus_musculus 0 324
ENSMUST00000116437 Snap23-002 protein_coding Mus_musculus 0 324
ENSMUST00000153580 Snap23-006 protein_coding Mus_musculus 0 294
ENSMUST00000137144 Snap23-004 retained_intron Mus_musculus 3.00004e-41 172

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