C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 4 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000566382 LARP4P-001 ENSG00000261315 9606 + 15:36617089-36619265 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000566382
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000566382 0.005±0.00 0.065±0.00 0.106±0.10 0.085±0.00 0.766±0.58 0.237±0.00 0.084±0.00 0.237±0.23 0.073±0.03 0.010±0.00 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HI CIL_0006HI_0001 CGP 15:35217345-36810248
CIL_0007MM CIL_0007MM_0001 UCNEbase 15:35253766-37880700
CIL_0008V8 CIL_0008V8_0001 VISTA 15:36226820-36828494
CIL_00088L CIL_00088L_0001 VISTA 15:36372618-36973897
CIL_0008GX CIL_0008GX_0001 VISTA 15:36373931-36975330
CIL_00084J CIL_00084J_0001 VISTA 15:36391617-36991995
CIL_0006QS CIL_0006QS_0001 CGP 15:36579611-37101299
CIL_00087U CIL_00087U_0001 VISTA 15:36595901-37198492
CIL_0008KD CIL_0008KD_0001 VISTA 15:36599207-37200420

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057632 Larp4-201 protein_coding Mus_musculus 0 1958
ENSMUST00000100206 Larp4-202 protein_coding Mus_musculus 0 1947
ENSMUST00000122467 Gm14373-001 processed_pseudogene Mus_musculus 0 1908
ENSMUST00000181591 Gm8177-001 processed_pseudogene Mus_musculus 0 1299

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