C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100206 Larp4-202 ENSMUSG00000023025 10090 + 15:99972780-100016351 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100206 2.068±0.94 1.753±0.31 6.432±0.18 3.506±2.09 3.612±0.99 1.679±0.34 2.384±1.54 4.476±1.75 5.214±3.30 1.635±0.00 4.505±0.40 6.666±3.46 11.262±5.68 3.028±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_000058 CIL_000058_0002 CGP 15:99918348-100016351
CIL_0006DT CIL_0006DT_0002 CGP 15:99970074-100219473

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007010 IEA cytoskeleton organization
GO:0016020 IEA membrane
GO:0022604 IEA regulation of cell morphogenesis
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293618 LARP4-201 protein_coding Homo_sapiens 0 1572
ENST00000347328 LARP4-001 protein_coding Homo_sapiens 0 1823
ENST00000398473 LARP4-002 protein_coding Homo_sapiens 0 3118
ENST00000429001 LARP4-015 protein_coding Homo_sapiens 0 3123
ENST00000517559 LARP4-008 protein_coding Homo_sapiens 0 481
ENST00000518444 LARP4-003 protein_coding Homo_sapiens 0 2972
ENST00000518561 LARP4-006 protein_coding Homo_sapiens 0 1583
ENST00000520064 LARP4-018 protein_coding Homo_sapiens 0 1186
ENST00000521120 LARP4-009 retained_intron Homo_sapiens 0 619
ENST00000522085 LARP4-004 protein_coding Homo_sapiens 0 1668
ENST00000523389 LARP4-007 protein_coding Homo_sapiens 0 220
ENST00000548174 LARP4-011 protein_coding Homo_sapiens 0 281
ENST00000548697 LARP4-013 protein_coding Homo_sapiens 0 278
ENST00000548993 LARP4-014 protein_coding Homo_sapiens 0 623
ENST00000550260 LARP4-017 protein_coding Homo_sapiens 0 616
ENST00000550522 LARP4-010 protein_coding Homo_sapiens 0 357
ENST00000551886 LARP4-016 protein_coding Homo_sapiens 0 586
ENST00000552445 LARP4-012 protein_coding Homo_sapiens 0 375
ENST00000566382 LARP4P-001 transcribed_processed_pseudogene Homo_sapiens 0 1947
ENST00000614335 LARP4-202 protein_coding Homo_sapiens 0 1022
ENST00000615080 LARP4-203 protein_coding Homo_sapiens 0 953
ENST00000616828 LARP4-204 protein_coding Homo_sapiens 0 1668

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