C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057632 Larp4-201 ENSMUSG00000023025 10090 + 15:99970074-100016351 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000057632
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000057632 5.114±1.90 6.901±1.86 5.796±2.66 7.966±1.19 3.402±0.00 5.707±2.68 5.109±2.11 7.496±1.28 10.210±4.10 2.621±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_000058 CIL_000058_0002 CGP 15:99918348-100016351
CIL_0006DT CIL_0006DT_0002 CGP 15:99970074-100219473

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293618 LARP4-201 protein_coding Homo_sapiens 0 1435
ENST00000347328 LARP4-001 protein_coding Homo_sapiens 0 1823
ENST00000398473 LARP4-002 protein_coding Homo_sapiens 0 3025
ENST00000429001 LARP4-015 protein_coding Homo_sapiens 0 2964
ENST00000517559 LARP4-008 protein_coding Homo_sapiens 0 490
ENST00000518444 LARP4-003 protein_coding Homo_sapiens 0 2885
ENST00000518561 LARP4-006 protein_coding Homo_sapiens 0 1589
ENST00000520064 LARP4-018 protein_coding Homo_sapiens 0 1186
ENST00000521120 LARP4-009 retained_intron Homo_sapiens 0 619
ENST00000522085 LARP4-004 protein_coding Homo_sapiens 0 1594
ENST00000523389 LARP4-007 protein_coding Homo_sapiens 0 226
ENST00000548174 LARP4-011 protein_coding Homo_sapiens 0 287
ENST00000548697 LARP4-013 protein_coding Homo_sapiens 0 283
ENST00000548993 LARP4-014 protein_coding Homo_sapiens 0 628
ENST00000550260 LARP4-017 protein_coding Homo_sapiens 0 592
ENST00000550522 LARP4-010 protein_coding Homo_sapiens 0 363
ENST00000551886 LARP4-016 protein_coding Homo_sapiens 0 531
ENST00000552445 LARP4-012 protein_coding Homo_sapiens 0 381
ENST00000566382 LARP4P-001 transcribed_processed_pseudogene Homo_sapiens 0 1958
ENST00000614335 LARP4-202 protein_coding Homo_sapiens 0 944
ENST00000615080 LARP4-203 protein_coding Homo_sapiens 0 867
ENST00000616828 LARP4-204 protein_coding Homo_sapiens 0 1592

Loading