C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ovarian tumor suppressor candidate 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000572195 OVCA2-001 ENSG00000262664 9606 + 17:2041936-2043430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverMusclePlacentaENST00000572195
Transcript ID Adipose Breast Colon Heart Kidney Liver Muscle Placenta
ENST00000572195 4.614±0.00 1.012±0.00 3.908±0.00 5.121±0.00 10.233±0.00 10.357±0.00 6.414±3.85 9.295±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995
CIL_0007KQ CIL_0007KQ_0001 UCNEbase 17:1996571-2212289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0008152 NAS metabolic process
GO:0016787 NAS:IEA hydrolase activity
GO:0032526 IDA response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071562 Ovca2-001 protein_coding Mus_musculus 0 649
ENSMUST00000156489 Dph1-004 retained_intron Mus_musculus 0 649
ENSMUST00000123489 Ovca2-002 processed_transcript Mus_musculus 0 592
ENSMUST00000044949 Dph1-001 protein_coding Mus_musculus 0 483
ENSMUST00000150910 Dph1-003 processed_transcript Mus_musculus 1e-17 95

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