C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: candidate tumor suppressor in ovarian cancer 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071562 Ovca2-001 ENSMUSG00000038268 10090 - 11:75175942-75178835 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071562
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071562 8.511±2.42 6.031±1.72 7.512±1.47 6.593±1.41 5.451±1.64 2.900±0.36 7.162±0.52 4.803±1.17 6.550±0.50 0.952±0.62 7.603±2.68 4.151±2.47 2.579±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435
CIL_0007KQ CIL_0007KQ_0002 UCNEbase 11:75016990-75215448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0032526 IEA response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263083 DPH1-001 protein_coding Homo_sapiens 0 484
ENST00000263084 DPH1-019 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000570477 DPH1-003 protein_coding Homo_sapiens 0 300
ENST00000570867 DPH1-005 retained_intron Homo_sapiens 0 484
ENST00000571418 DPH1-007 protein_coding Homo_sapiens 0 359
ENST00000571710 DPH1-009 protein_coding Homo_sapiens 0 483
ENST00000572195 OVCA2-001 protein_coding Homo_sapiens 0 649
ENST00000572214 DPH1-013 retained_intron Homo_sapiens 5e-21 106
ENST00000572248 DPH1-016 retained_intron Homo_sapiens 2e-18 97
ENST00000572684 DPH1-006 retained_intron Homo_sapiens 0 483
ENST00000575162 DPH1-017 protein_coding Homo_sapiens 0 268
ENST00000575667 DPH1-002 nonsense_mediated_decay Homo_sapiens 0 359

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