C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: candidate tumor suppressor in ovarian cancer 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123489 Ovca2-002 ENSMUSG00000038268 10090 - 11:75177801-75178787 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MusclePlacentaENSMUST00000123489
Transcript ID Muscle Placenta
ENSMUST00000123489 4.976±0.00 9.244±3.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435
CIL_0007KQ CIL_0007KQ_0002 UCNEbase 11:75016990-75215448

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263083 DPH1-001 protein_coding Homo_sapiens 0 483
ENST00000263084 DPH1-019 nonsense_mediated_decay Homo_sapiens 2.00386e-43 180
ENST00000570477 DPH1-003 protein_coding Homo_sapiens 0 298
ENST00000570867 DPH1-005 retained_intron Homo_sapiens 0 483
ENST00000571418 DPH1-007 protein_coding Homo_sapiens 0 357
ENST00000571710 DPH1-009 protein_coding Homo_sapiens 0 483
ENST00000572195 OVCA2-001 protein_coding Homo_sapiens 0 592
ENST00000572214 DPH1-013 retained_intron Homo_sapiens 2e-20 104
ENST00000572248 DPH1-016 retained_intron Homo_sapiens 5e-18 95
ENST00000572684 DPH1-006 retained_intron Homo_sapiens 0 483
ENST00000575162 DPH1-017 protein_coding Homo_sapiens 0 267
ENST00000575667 DPH1-002 nonsense_mediated_decay Homo_sapiens 0 357

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