C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | protocadherin gamma subfamily A, 9 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000573521  |
PCDHGA9-001 |
ENSG00000261934 |
9606 | + |
5:141402953-141512979  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000630 | CIL_000630_000Q | CGP | 5:141330571-141512981 |
| CIL_000630 | CIL_000630_000P | CGP | 5:141338760-141512979 |
| CIL_000630 | CIL_000630_0012 | CGP | 5:141343829-141512979 |
| CIL_000630 | CIL_000630_0011 | CGP | 5:141350102-141512979 |
| CIL_000630 | CIL_000630_0015 | CGP | 5:141355025-141512979 |
| CIL_000630 | CIL_000630_000Y | CGP | 5:141360042-141512979 |
| CIL_000630 | CIL_000630_000S | CGP | 5:141364232-141512979 |
| CIL_000630 | CIL_000630_0014 | CGP | 5:141370264-141512979 |
| CIL_000630 | CIL_000630_000U | CGP | 5:141373914-141512979 |
| CIL_000630 | CIL_000630_000T | CGP | 5:141382739-141512979 |
| CIL_000630 | CIL_000630_000Z | CGP | 5:141387698-141512979 |
| CIL_000630 | CIL_000630_000V | CGP | 5:141390157-141512979 |
| CIL_000630 | CIL_000630_0016 | CGP | 5:141397987-141512979 |
| CIL_000630 | CIL_000630_0013 | CGP | 5:141402932-141512979 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005509 | IEA | calcium ion binding |
| GO:0005886 | IEA | plasma membrane |
| GO:0007156 | IEA | homophilic cell adhesion via plasma membrane adhesion molecules |
| GO:0007283 | IEA | spermatogenesis |
| GO:0016020 | IEA | membrane |
| GO:0016021 | IEA | integral component of membrane |
| GO:0044822 | IDA | poly(A) RNA binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000091935
|
Pcdhga12-209 | protein_coding | Mus_musculus | 0 | 3142 |
|
ENSMUST00000066149
|
Pcdhga12-206 | protein_coding | Mus_musculus | 0 | 2497 |
|
ENSMUST00000073447
|
Pcdhga12-207 | protein_coding | Mus_musculus | 0 | 1796 |
|
ENSMUST00000044851
|
Pcdhga12-202 | protein_coding | Mus_musculus | 0 | 1736 |
|
ENSMUST00000061279
|
Pcdhga12-204 | protein_coding | Mus_musculus | 0 | 1661 |
|
ENSMUST00000003599
|
Pcdhga12-201 | protein_coding | Mus_musculus | 0 | 1129 |
|
ENSMUST00000055935
|
Pcdhga12-203 | protein_coding | Mus_musculus | 0 | 1125 |
|
ENSMUST00000066140
|
Pcdhga12-205 | protein_coding | Mus_musculus | 0 | 1125 |
|
ENSMUST00000076807
|
Pcdhga12-208 | protein_coding | Mus_musculus | 0 | 1125 |
|
ENSMUST00000115661
|
Pcdha10-208 | protein_coding | Mus_musculus | 0 | 569 |
