C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 53 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000576019 VPS53-011 ENSG00000141252 9606 - 17:653326-721717 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000576019
Transcript ID Ovary Placenta Testis
ENST00000576019 12.484±0.00 13.260±0.00 33.392±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AN CIL_0006AN_0002 CGP 17:439978-721717

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170143 Vps53-008 retained_intron Mus_musculus 0 640
ENSMUST00000169734 Vps53-012 nonsense_mediated_decay Mus_musculus 0 640
ENSMUST00000166752 Vps53-015 nonsense_mediated_decay Mus_musculus 0 640
ENSMUST00000108419 Vps53-014 protein_coding Mus_musculus 0 640
ENSMUST00000056601 Vps53-001 protein_coding Mus_musculus 0 640
ENSMUST00000166084 Vps53-011 processed_transcript Mus_musculus 0 623
ENSMUST00000166436 Vps53-009 protein_coding Mus_musculus 0 483
ENSMUST00000143459 Vps53-005 processed_transcript Mus_musculus 0 387
ENSMUST00000141773 Vps53-004 processed_transcript Mus_musculus 0 387
ENSMUST00000094015 Vps53-013 protein_coding Mus_musculus 0 276
ENSMUST00000167114 Vps53-016 protein_coding Mus_musculus 0 254
ENSMUST00000163878 Vps53-010 nonsense_mediated_decay Mus_musculus 1e-24 117

Loading