C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 53 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141252 VPS53 9606 - 17:508668-721717 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291074 VPS53-002 532318-714843 protein_coding
  ENST00000389040 VPS53-004 532827-714709 nonsense_mediated_decay
  ENST00000401468 VPS53-003 532827-714709 protein_coding
  ENST00000437048 VPS53-001 508668-714856 protein_coding
  ENST00000541903 VPS53-017 519119-522995 processed_transcript
  ENST00000570359 VPS53-010 536424-539204 retained_intron
  ENST00000570510 VPS53-012 697418-714513 processed_transcript
  ENST00000570650 VPS53-019 600880-628231 protein_coding
  ENST00000570771 VPS53-018 519855-532993 retained_intron
  ENST00000571456 VPS53-021 705625-714814 processed_transcript
  ENST00000571805 VPS53-006 532708-714846 protein_coding
  ENST00000572259 VPS53-014 674367-676345 retained_intron
  ENST00000572334 VPS53-013 631550-685195 processed_transcript
  ENST00000572607 VPS53-016 551634-562686 retained_intron
  ENST00000573028 VPS53-005 531968-714856 nonsense_mediated_decay
  ENST00000574029 VPS53-020 517382-714830 protein_coding
  ENST00000575100 VPS53-022 673696-675667 retained_intron
  ENST00000575207 VPS53-015 657429-714791 processed_transcript
  ENST00000576019 VPS53-011 653326-721717 protein_coding
  ENST00000576149 VPS53-009 518953-676407 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000291074ENST00000389040ENST00000437048ENST00000571805ENST00000576019ENST00000576149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000291074 N/A N/A N/A N/A N/A N/A N/A N/A 1.225±0.00 N/A N/A N/A N/A N/A
ENST00000389040 6.212±0.00 N/A N/A 2.991±0.00 6.459±0.00 3.304±0.00 2.509±0.00 N/A N/A N/A N/A 1.770±0.00 N/A N/A
ENST00000437048 2.314±0.00 2.952±0.00 N/A 4.005±2.66 1.454±0.71 1.666±0.00 N/A 3.014±0.00 0.927±0.00 1.746±0.00 1.695±1.08 1.020±0.45 0.818±0.22 3.746±0.78
ENST00000571805 N/A N/A 1.890±0.00 2.337±0.00 N/A N/A 1.339±0.00 N/A 1.442±0.00 2.777±0.00 1.824±0.00 1.689±0.00 1.284±0.01 N/A
ENST00000576019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.484±0.00 13.260±0.00 33.392±0.00
ENST00000576149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.986±0.00 2.700±0.00 1.930±0.81 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AN CIL_0006AN_0002 CGP 17:439978-721717

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000938 IDA GARP complex
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069324 vps53 vacuolar protein sorting 53 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000017288 Vps53 vacuolar protein sorting 53 (yeast) protein_coding Mus_musculus

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