C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 12 (potassium/chloride transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000576616 SLC12A4-017 ENSG00000124067 9606 - 16:67944485-67968553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverLungOvaryPlacentaENST00000576616
Transcript ID Brain Heart Liver Lung Ovary Placenta
ENST00000576616 0.429±0.00 0.543±0.00 2.244±0.00 1.590±0.00 1.800±0.00 6.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000030 CIL_000030_0001 CGP 16:67934502-67944131
CIL_00003H CIL_00003H_0001 CGP 16:67939750-67969601
CIL_00003P CIL_00003P_0001 CGP 16:67943474-67980829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005765 IDA lysosomal membrane
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 TAS:IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0006821 TAS chloride transport
GO:0006884 TAS cell volume homeostasis
GO:0015377 IEA cation:chloride symporter activity
GO:0015379 IEA potassium:chloride symporter activity
GO:0016020 IEA:TAS membrane
GO:0016021 IEA integral component of membrane
GO:0019901 IPI protein kinase binding
GO:0055085 IEA:TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116429 Slc12a4-001 protein_coding Mus_musculus 0 3969
ENSMUST00000034370 Slc12a4-201 protein_coding Mus_musculus 0 3941
ENSDART00000057258 slc12a5a-201 protein_coding Danio_rerio 0 654
ENSDART00000157129 slc12a5a-001 protein_coding Danio_rerio 0 654
ENSMUST00000141326 Slc12a4-004 retained_intron Mus_musculus 0 628
ENSMUST00000132231 Slc12a4-003 protein_coding Mus_musculus 0 577
ENSMUST00000143381 Slc12a4-002 retained_intron Mus_musculus 0 291

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