C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577486 THRA-010 ENSG00000126351 9606 + 17:40072091-40077558 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyENST00000577486
Transcript ID Breast Kidney
ENST00000577486 5.032±0.00 2.159±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002PX CIL_0002PX_0001 CGP 17:40015361-40061215
CIL_0002KL CIL_0002KL_0001 CGP 17:40019097-40093867
CIL_0002L8 CIL_0002L8_0001 CGP 17:40058290-40100725

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153043 Thra-007 protein_coding Mus_musculus 0 603
ENSMUST00000103139 Thra-003 protein_coding Mus_musculus 0 603
ENSMUST00000064187 Thra-001 protein_coding Mus_musculus 0 603
ENSMUST00000152195 Thra-002 processed_transcript Mus_musculus 0 603
ENSMUST00000150693 Thra-006 processed_transcript Mus_musculus 0 394
ENSMUST00000153468 Thra-009 processed_transcript Mus_musculus 0 394
ENSMUST00000124072 Thra-004 protein_coding Mus_musculus 0 307
ENSMUST00000124130 Thra-008 processed_transcript Mus_musculus 8e-20 100

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