C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577831 MED1-003 ENSG00000125686 9606 - 17:39407714-39451272 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartMuscleENST00000577831
Transcript ID Breast Colon Heart Muscle
ENST00000577831 0.780±0.00 1.276±0.00 1.067±0.00 0.859±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_0007D6 CIL_0007D6_0001 CGP 17:39252644-39451286
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_0007D3 CIL_0007D3_0001 CGP 17:39404285-39564907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0016592 IEA mediator complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018304 Med1-002 protein_coding Mus_musculus 0 5439
ENSMUST00000107545 Med1-001 protein_coding Mus_musculus 0 5439
ENSMUST00000092735 Med1-004 protein_coding Mus_musculus 0 1687
ENSMUST00000126483 Med1-006 processed_transcript Mus_musculus 0 726
ENSMUST00000147933 Med1-007 processed_transcript Mus_musculus 0 569
ENSMUST00000129557 Med1-003 processed_transcript Mus_musculus 0 545
ENSMUST00000135479 Med1-005 processed_transcript Mus_musculus 0 444

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