C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007D3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125686-ENSG00000167258 CGP 9606 17:39404285-39564907
GeneTranscriptPositionBiotype
ENSG00000125686 (MED1)
mediator complex subunit 1 		ENST00000300651 (MED1-001) 39406601-39451286 protein_coding
ENST00000394287 (MED1-002) 39404285-39451268 protein_coding
ENST00000577831 (MED1-003) 39407714-39451272 nonsense_mediated_decay
ENST00000581334 (MED1-005) 39443550-39451272 nonsense_mediated_decay
ENST00000584308 (MED1-004) 39427446-39431236 retained_intron
ENSG00000167258 (CDK12)
cyclin-dependent kinase 12 		ENST00000430627 (CDK12-008) 39461761-39532477 protein_coding
ENST00000447079 (CDK12-001) 39462039-39535146 protein_coding
ENST00000558240 (CDK12-003) 39550191-39564830 processed_transcript
ENST00000559545 (CDK12-004) 39547821-39564907 processed_transcript
ENST00000559663 (CDK12-002) 39525867-39551141 nonsense_mediated_decay
ENST00000581593 (CDK12-011) 39471514-39494692 processed_transcript
ENST00000581963 (CDK12-005) 39543991-39546682 retained_intron
ENST00000584336 (CDK12-007) 39529882-39531844 retained_intron
ENST00000584632 (CDK12-010) 39461511-39526163 protein_coding
ENST00000585161 (CDK12-006) 39548941-39550976 retained_intron
ENSG00000222777 (RNU6-233P)
RNA, U6 small nuclear 233, pseudogene 		ENST00000410845 (RNU6-233P-201) 39546104-39546244 snRNA
ENSG00000223091 (RNU6-981P)
RNA, U6 small nuclear 981, pseudogene 		ENST00000411159 (RNU6-981P-201) 39482486-39482590 snRNA
ENSG00000266469 (CTB-131K11.1)
 ENST00000582842 (CTB-131K11.1-001) 39401793-39406233 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007D3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018160-ENSMUSG00000003119 CGP 10090 11:98152154-98278504
GeneTranscriptPositionBiotype
ENSMUSG00000003119 (Cdk12)
cyclin-dependent kinase 12 		ENSMUST00000003203 (Cdk12-002) 98203314-98246704 protein_coding
ENSMUST00000107538 (Cdk12-001) 98203335-98251044 protein_coding
ENSMUST00000107539 (Cdk12-005) 98203059-98251564 protein_coding
ENSMUST00000125152 (Cdk12-007) 98263502-98268011 processed_transcript
ENSMUST00000145113 (Cdk12-003) 98220401-98225522 processed_transcript
ENSMUST00000147441 (Cdk12-006) 98241737-98278504 processed_transcript
ENSMUSG00000018160 (Med1)
mediator complex subunit 1 		ENSMUST00000018304 (Med1-002) 98154248-98192955 protein_coding
ENSMUST00000092735 (Med1-004) 98152154-98193260 protein_coding
ENSMUST00000107545 (Med1-001) 98152155-98193293 protein_coding
ENSMUST00000126483 (Med1-006) 98153011-98163957 processed_transcript
ENSMUST00000129557 (Med1-003) 98169911-98193276 processed_transcript
ENSMUST00000135479 (Med1-005) 98169363-98179996 processed_transcript
ENSMUST00000147933 (Med1-007) 98157753-98161022 processed_transcript
ENSMUSG00000084457 (n-R5s73)
nuclear encoded rRNA 5S 73 		ENSMUST00000122508 (n-R5s73-201) 98273260-98273366 rRNA
ENSMUSG00000085897 (Gm11604)
predicted gene 11604 		ENSMUST00000121487 (Gm11604-001) 98185366-98186107 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007D3_0001ENSG00000125686ENST00000300651ENST00000394287ENST00000577831ENST00000581334ENST00000584308ENSG00000167258ENST00000430627ENST00000447079ENST00000558240ENST00000559545ENST00000559663ENST00000581593ENST00000581963ENST00000584336ENST00000584632ENST00000585161ENSG00000222777ENST00000410845ENSG00000223091ENST00000411159ENSG00000266469ENST00000582842CIL_0007D3_0002ENSMUSG00000003119ENSMUST00000003203ENSMUST00000107538ENSMUST00000107539ENSMUST00000125152ENSMUST00000145113ENSMUST00000147441ENSMUSG00000018160ENSMUST00000018304ENSMUST00000092735ENSMUST00000107545ENSMUST00000126483ENSMUST00000129557ENSMUST00000135479ENSMUST00000147933ENSMUSG00000084457ENSMUST00000122508ENSMUSG00000085897ENSMUST00000121487
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007D3_0001ENSG00000125686ENST00000300651ENST00000394287ENST00000577831ENSG00000167258ENST00000430627ENST00000447079ENST00000584632ENSG00000222777ENST00000410845ENSG00000223091ENST00000411159ENSG00000266469ENST00000582842CIL_0007D3_0002ENSMUSG00000003119ENSMUST00000003203ENSMUST00000107538ENSMUST00000107539ENSMUST00000147441ENSMUSG00000018160ENSMUST00000018304ENSMUST00000092735ENSMUST00000107545ENSMUST00000129557ENSMUSG00000084457ENSMUST00000122508ENSMUSG00000085897ENSMUST00000121487
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125686 ENST00000300651 4.806±0.00 1.058±0.00 0.579±0.00 2.168±0.57 1.874±0.38 2.835±0.46 2.276±1.07 2.441±0.65 1.776±1.13 2.320±1.34 N/A 3.561±2.00 2.544±0.85 1.874±0.26
ENST00000394287 N/A N/A 1.156±0.00 1.145±0.00 2.248±0.00 N/A N/A N/A 2.529±0.00 1.355±0.00 N/A 3.238±0.00 N/A 1.450±0.00
ENST00000577831 N/A N/A N/A N/A 0.780±0.00 1.276±0.00 1.067±0.00 N/A N/A N/A 0.859±0.00 N/A N/A N/A
ENST00000581334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167258 ENST00000430627 2.804±0.00 1.334±0.00 N/A 1.649±0.00 1.928±0.00 1.923±0.98 1.685±0.00 2.069±0.00 1.145±0.05 1.478±0.27 1.595±0.00 3.500±2.34 2.924±1.07 6.613±3.68
ENST00000447079 1.096±0.00 1.019±0.00 0.914±0.00 0.812±0.32 0.984±0.23 1.857±0.00 0.834±0.46 1.816±0.40 1.306±0.15 2.254±0.08 0.191±0.00 2.540±0.87 1.402±0.46 3.587±0.00
ENST00000558240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584632 N/A N/A 2.052±0.00 1.426±0.00 4.679±0.00 3.185±0.00 N/A 3.455±0.00 2.605±0.00 2.515±0.00 N/A 3.821±1.56 N/A N/A
ENST00000585161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222777 ENST00000410845 0.654±0.00 N/A N/A N/A 0.681±0.00 N/A 0.633±0.00 0.411±0.00 N/A N/A N/A 8.407±0.00 N/A 0.526±0.32
ENSG00000223091 ENST00000411159 N/A 0.808±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266469 ENST00000582842 N/A 6.439±0.00 1.362±0.00 0.978±0.00 N/A N/A 0.249±0.00 1.172±0.00 1.096±0.00 N/A 5.236±0.00 3.198±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003119 ENSMUST00000003203 N/A N/A N/A 0.551±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A
ENSMUST00000107538 1.207±0.56 1.958±0.85 1.758±0.73 1.523±0.46 1.427±0.43 2.274±0.65 N/A 0.829±0.04 1.429±0.46 1.275±0.26 N/A 2.604±1.05 3.083±1.82 1.841±0.35
ENSMUST00000107539 3.461±0.27 1.871±0.67 1.464±0.09 1.758±0.89 3.695±1.11 1.609±0.60 1.957±0.16 3.033±0.26 2.183±0.72 3.349±0.19 0.554±0.07 3.823±1.18 2.283±1.20 3.233±0.30
ENSMUST00000125152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147441 1.989±0.02 1.779±0.58 4.982±0.37 4.206±0.10 2.780±1.16 2.852±0.75 1.130±0.26 2.116±0.36 2.796±1.35 2.817±0.38 0.916±0.39 2.783±1.58 2.531±0.00 3.962±0.00
ENSMUSG00000018160 ENSMUST00000018304 1.426±0.00 N/A N/A N/A 2.336±1.22 1.075±0.20 1.705±0.34 N/A N/A N/A N/A 3.176±1.32 0.807±0.00 2.718±0.83
ENSMUST00000092735 N/A N/A N/A N/A N/A N/A N/A N/A 2.487±0.69 N/A N/A N/A 3.382±1.43 5.021±3.36
ENSMUST00000107545 6.700±1.57 8.792±1.60 6.168±0.12 5.392±3.13 4.345±1.76 5.269±0.61 4.242±0.64 5.173±0.29 3.612±0.81 6.893±0.12 3.070±0.35 6.097±1.38 2.762±1.51 6.369±3.05
ENSMUST00000126483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129557 N/A 15.405±3.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084457 ENSMUST00000122508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.478±0.00 N/A
ENSMUSG00000085897 ENSMUST00000121487 0.316±0.14 0.421±0.29 0.124±0.00 0.150±0.09 0.408±0.20 0.171±0.04 0.141±0.09 0.146±0.08 0.190±0.07 0.184±0.08 N/A 0.584±0.42 0.259±0.12 0.355±0.21

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