C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of zeste 12 homolog pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578070 SUZ12P1-005 ENSG00000264538 9606 + 17:30709299-30770034 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMusclePlacentaENST00000578070
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Placenta
ENST00000578070 1.873±0.81 0.458±0.00 0.792±0.00 0.280±0.00 1.005±0.00 1.524±0.00 0.172±0.00 0.439±0.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000141158 Lphn1-001 protein_coding Mus_musculus 0 246
ENSMUST00000163272 Suz12-201 protein_coding Mus_musculus 0 237
ENSMUST00000017692 Suz12-001 protein_coding Mus_musculus 0 237
ENSMUST00000152978 Lphn1-005 protein_coding Mus_musculus 0 198
ENSMUST00000132500 Lphn1-004 protein_coding Mus_musculus 0 198
ENSMUST00000045393 Lphn1-003 protein_coding Mus_musculus 0 198
ENSMUST00000124355 Lphn1-002 nonsense_mediated_decay Mus_musculus 0 198
ENSMUST00000126091 Suz12-002 nonsense_mediated_decay Mus_musculus 1.4013e-45 187
ENSMUST00000148140 Suz12-004 retained_intron Mus_musculus 1.4013e-45 187
ENSMUST00000120719 Gm14752-001 processed_pseudogene Mus_musculus 7e-34 148
ENSMUST00000132312 Suz12-005 retained_intron Mus_musculus 6e-30 135

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