C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578373 ERBB2-007 ENSG00000141736 9606 + 17:39700080-39728577 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000578373
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000578373 6.135±0.00 5.196±0.00 4.055±0.00 21.456±0.00 17.939±0.00 14.076±0.00 21.114±0.00 3.162±0.00 33.275±0.00 3.600±2.55 31.615±0.00 25.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_0002PP CIL_0002PP_0001 CGP 17:39667981-39696797
CIL_0002PO CIL_0002PO_0001 CGP 17:39671122-39730426
CIL_0002PN CIL_0002PN_0001 CGP 17:39687914-39730787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058295 Erbb2-001 protein_coding Mus_musculus 0 3714
ENSMUST00000136032 Erbb2-002 processed_transcript Mus_musculus 0 1988

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