C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000463235}
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578794 RP11-159D12.5-001 ENSG00000266086 9606 - 17:57989038-58005253 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000578794
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000578794 29.243±0.00 50.691±0.00 46.210±0.00 43.704±0.00 13.529±0.00 28.980±0.00 34.550±0.00 53.421±0.00 9.933±0.00 46.939±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PL CIL_0007PL_0001 UCNEbase 17:57406597-58005077
CIL_0009DM CIL_0009DM_0001 VISTA 17:57461902-58063720
CIL_0009DL CIL_0009DL_0001 VISTA 17:57574410-58175690

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183352 SRSF1-201 protein_coding Mus_musculus 0 544
ENSMUST00000132983 Srsf1-004 retained_intron Mus_musculus 0 544
ENSMUST00000079866 Srsf1-003 protein_coding Mus_musculus 0 544
ENSMUST00000139129 Srsf1-001 protein_coding Mus_musculus 0 544
ENSMUST00000172186 Srsf1-005 nonsense_mediated_decay Mus_musculus 0 226
ENSMUST00000134824 Srsf1-002 nonsense_mediated_decay Mus_musculus 0 226
ENSMUST00000107920 Srsf1-006 protein_coding Mus_musculus 0 222

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