C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139129 Srsf1-001 ENSMUSG00000018379 10090 + 11:88047373-88053755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139129 6.906±3.39 19.528±0.00 16.543±2.23 26.182±16.94 3.523±0.74 6.998±3.13 3.593±0.67 4.389±1.14 17.786±13.28 5.936±0.10 5.012±1.75 12.456±5.79 10.781±5.77 6.057±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DL CIL_0009DL_0002 VISTA 11:87880548-88481652
CIL_0009DM CIL_0009DM_0002 VISTA 11:87974079-88576075
CIL_00039M CIL_00039M_0002 CGP 11:87979525-88053755

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000395 ISS mRNA 5'-splice site recognition
GO:0001701 IMP in utero embryonic development
GO:0003723 ISS RNA binding
GO:0003729 ISO mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008380 IGI RNA splicing
GO:0016607 IDA nuclear speck
GO:0035145 IEA exon-exon junction complex
GO:0043488 IEA regulation of mRNA stability
GO:0044822 IEA poly(A) RNA binding
GO:0048024 IEA regulation of mRNA splicing, via spliceosome
GO:0050733 IPI RS domain binding
GO:0051028 IEA mRNA transport
GO:0060048 IGI cardiac muscle contraction
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258962 SRSF1-001 protein_coding Homo_sapiens 0 2163
ENST00000578430 SRSF1-007 retained_intron Homo_sapiens 0 606
ENST00000578794 RP11-159D12.5-001 protein_coding Homo_sapiens 0 544
ENST00000581497 SRSF1-009 processed_transcript Homo_sapiens 0 396
ENST00000581979 SRSF1-004 nonsense_mediated_decay Homo_sapiens 0 1166
ENST00000582730 SRSF1-003 protein_coding Homo_sapiens 0 3203
ENST00000583741 SRSF1-005 nonsense_mediated_decay Homo_sapiens 0 1781
ENST00000584668 SRSF1-008 nonsense_mediated_decay Homo_sapiens 0 728
ENST00000584773 SRSF1-002 protein_coding Homo_sapiens 0 1147
ENST00000585096 SRSF1-006 protein_coding Homo_sapiens 0 387

Loading