C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580774 CHST9-003 ENSG00000154080 9606 - 18:26915779-27185298 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000580774
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000580774 0.102±0.00 0.331±0.00 0.234±0.00 0.137±0.00 0.995±0.75 0.216±0.00 0.417±0.00 3.038±1.69 0.244±0.00 0.052±0.02 0.823±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EP CIL_0006EP_0001 CGP 18:26852038-27185317

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001537 ISS N-acetylgalactosamine 4-O-sulfotransferase activity
GO:0005576 IEA extracellular region
GO:0005975 TAS carbohydrate metabolic process
GO:0006790 IDA sulfur compound metabolic process
GO:0016021 NAS integral component of membrane
GO:0016051 IEA carbohydrate biosynthetic process
GO:0030166 ISS proteoglycan biosynthetic process
GO:0030203 NAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0042446 ISS hormone biosynthetic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130553 Chst9-001 nonsense_mediated_decay Mus_musculus 0 1096
ENSMUST00000053017 Chst9-002 protein_coding Mus_musculus 0 1096

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