C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585464 TAF9P3-001 ENSG00000267692 9606 + 19:30037285-30037411 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastOvaryTestisENST00000585464
Transcript ID Adipose Adrenal Brain Breast Ovary Testis
ENST00000585464 1.371±0.00 2.217±0.00 0.326±0.00 2.538±0.00 2.994±1.02 1.120±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TZ CIL_0008TZ_0001 VISTA 19:29588658-30189738
CIL_000835 CIL_000835_0001 VISTA 19:29703707-30304596
CIL_000834 CIL_000834_0001 VISTA 19:29775043-30376109
CIL_00090S CIL_00090S_0001 VISTA 19:29783480-30384453
CIL_0007OB CIL_0007OB_0001 UCNEbase 19:29888853-30910612
CIL_0007PW CIL_0007PW_0001 VISTA 19:29956150-30557741
CIL_000833 CIL_000833_0001 VISTA 19:29976151-30577366

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084721 Ak6-201 protein_coding Mus_musculus 4e-33 143
ENSMUST00000190729 Ak6-002 protein_coding Mus_musculus 4e-33 143
ENSMUST00000185901 Ak6-003 retained_intron Mus_musculus 8e-30 132
ENSMUST00000022135 Ak6-001 protein_coding Mus_musculus 8e-30 132
ENSMUST00000167256 Taf9-201 protein_coding Mus_musculus 5e-27 122
ENSMUST00000187792 Taf9-004 protein_coding Mus_musculus 5e-27 122
ENSMUST00000185767 Taf9-003 protein_coding Mus_musculus 5e-27 122
ENSMUST00000190165 Taf9-002 protein_coding Mus_musculus 5e-27 122
ENSMUST00000190210 Ak6-004 retained_intron Mus_musculus 1e-23 111
ENSMUST00000190594 Taf9-001 protein_coding Mus_musculus 1e-23 111

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