C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ATP-binding cassette, sub-family A (ABC1), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586995 ABCA5-006 ENSG00000154265 9606 - 17:69247346-69302849 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000586995
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000586995 2.464±0.00 1.058±0.00 2.699±0.00 2.107±1.21 4.228±0.72 1.870±0.95 2.628±1.17 1.717±1.06 2.801±1.31 2.507±0.47 0.258±0.16 5.818±2.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006H0 CIL_0006H0_0001 CGP 17:69244311-69543331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0006200 IEA ATP catabolic process
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043961 Abca5-001 protein_coding Mus_musculus 0 2335
ENSMUST00000124714 Abca5-002 protein_coding Mus_musculus 0 1439
ENSMUST00000127318 Abca5-005 retained_intron Mus_musculus 0 470

Loading