C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lectin, galactoside-binding, soluble, 3 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587311 LGALS3BP-003 ENSG00000108679 9606 - 17:78971256-78979923 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000587311
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000587311 14.080±0.00 18.511±0.00 16.964±0.00 33.523±28.45 19.866±0.00 49.714±0.00 20.210±0.00 10.826±0.00 48.215±41.39 5.564±0.00 131.024±0.00 101.754±28.75 22.211±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062K CIL_00062K_0001 CGP 17:78870910-78980109
CIL_0003UB CIL_0003UB_0002 CGP 17:78971238-79009867

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0006898 IEA receptor-mediated endocytosis
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000141459 Lgals3bp-002 processed_transcript Mus_musculus 0.00000000009 73
ENSMUST00000043722 Lgals3bp-001 protein_coding Mus_musculus 0.00000000009 73
ENSMUST00000106290 Lgals3bp-005 protein_coding Mus_musculus 0.0000000003 71

Loading