C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lectin, galactoside-binding, soluble, 3 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043722 Lgals3bp-001 ENSMUSG00000033880 10090 - 11:118392751-118402092 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043722
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043722 98.314±54.27 121.708±8.15 50.202±2.55 1.641±0.21 149.079±22.31 85.329±5.55 16.587±2.26 56.946±4.84 36.008±10.82 58.133±12.17 4.821±0.88 82.189±27.32 31.641±26.33 2.046±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062K CIL_00062K_0002 CGP 11:118332360-118402092
CIL_0003UB CIL_0003UB_0003 CGP 11:118392751-118419086

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 ISS scavenger receptor activity
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IEA extracellular space
GO:0006898 IEA receptor-mediated endocytosis
GO:0007155 IEA cell adhesion
GO:0016020 IEA membrane
GO:0031012 IEA extracellular matrix
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262776 LGALS3BP-001 protein_coding Homo_sapiens 0 843
ENST00000585407 LGALS3BP-021 protein_coding Homo_sapiens 0 433
ENST00000587251 LGALS3BP-002 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000587310 LGALS3BP-009 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000587311 LGALS3BP-003 nonsense_mediated_decay Homo_sapiens 0.00000000009 73
ENST00000588198 LGALS3BP-005 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000588205 LGALS3BP-019 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000588587 LGALS3BP-013 retained_intron Homo_sapiens 0 254
ENST00000588899 LGALS3BP-011 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000588990 LGALS3BP-006 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000589527 LGALS3BP-020 protein_coding Homo_sapiens 0 553
ENST00000589775 LGALS3BP-018 protein_coding Homo_sapiens 0 431
ENST00000591274 LGALS3BP-017 protein_coding Homo_sapiens 0 207
ENST00000591778 LGALS3BP-007 protein_coding Homo_sapiens 0 268

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