C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lectin, galactoside-binding, soluble, 3 binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108679 LGALS3BP 9606 - 17:78971238-78980109 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262776 LGALS3BP-001 78971238-78980109 protein_coding
  ENST00000585407 LGALS3BP-021 78972798-78979935 protein_coding
  ENST00000586300 LGALS3BP-012 78976825-78979875 retained_intron
  ENST00000586720 LGALS3BP-004 78971285-78979908 nonsense_mediated_decay
  ENST00000587251 LGALS3BP-002 78971331-78979923 nonsense_mediated_decay
  ENST00000587310 LGALS3BP-009 78973000-78979911 nonsense_mediated_decay
  ENST00000587311 LGALS3BP-003 78971256-78979923 nonsense_mediated_decay
  ENST00000588198 LGALS3BP-005 78972470-78979947 nonsense_mediated_decay
  ENST00000588205 LGALS3BP-019 78973188-78977216 nonsense_mediated_decay
  ENST00000588508 LGALS3BP-014 78972386-78974997 retained_intron
  ENST00000588587 LGALS3BP-013 78972648-78976156 retained_intron
  ENST00000588899 LGALS3BP-011 78974632-78979891 nonsense_mediated_decay
  ENST00000588990 LGALS3BP-006 78974631-78979927 nonsense_mediated_decay
  ENST00000589527 LGALS3BP-020 78972557-78977323 protein_coding
  ENST00000589775 LGALS3BP-018 78972970-78979923 protein_coding
  ENST00000589906 LGALS3BP-010 78972975-78979908 protein_coding
  ENST00000591274 LGALS3BP-017 78974798-78979843 protein_coding
  ENST00000591778 LGALS3BP-007 78971238-78979918 protein_coding
  ENST00000592255 LGALS3BP-016 78972769-78974796 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262776ENST00000585407ENST00000586720ENST00000587251ENST00000587311ENST00000591778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262776 N/A N/A N/A 1.892±0.00 N/A N/A 7.015±0.00 N/A 3.970±0.00 5.550±0.00 1.223±0.00 46.463±41.90 N/A N/A
ENST00000585407 N/A N/A N/A N/A 5.821±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586720 N/A N/A N/A 1.841±0.00 N/A N/A 6.095±0.00 11.922±5.01 N/A N/A 7.340±0.00 N/A N/A N/A
ENST00000587251 N/A N/A 2.986±0.00 2.889±0.00 8.075±0.00 9.634±3.75 40.958±0.00 13.446±0.00 N/A 4.195±0.00 3.772±0.00 5.060±0.00 N/A 25.707±0.00
ENST00000587311 14.080±0.00 18.511±0.00 N/A 16.964±0.00 33.523±28.45 19.866±0.00 49.714±0.00 20.210±0.00 10.826±0.00 48.215±41.39 5.564±0.00 131.024±0.00 101.754±28.75 22.211±0.00
ENST00000591778 16.030±0.00 12.609±0.00 7.282±0.00 4.977±0.00 25.470±18.03 21.846±1.21 13.774±0.00 16.288±0.00 9.224±2.93 4.945±0.00 1.760±0.00 50.768±40.79 81.617±30.07 17.101±7.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062K CIL_00062K_0001 CGP 17:78870910-78980109
CIL_0003UB CIL_0003UB_0002 CGP 17:78971238-79009867

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006898 IEA receptor-mediated endocytosis
GO:0006968 TAS cellular defense response
GO:0007155 IEA cell adhesion
GO:0007165 TAS signal transduction
GO:0016020 IEA membrane
GO:0031012 IDA extracellular matrix
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037805 lgals3bpa lectin, galactoside-binding, soluble, 3 binding protein a protein_coding Danio_rerio
ENSDARG00000040528 lgals3bpb lectin, galactoside-binding, soluble, 3 binding protein b protein_coding Danio_rerio
ENSDARG00000076848 LGALS3BP (3 of 3) lectin, galactoside-binding, soluble, 3 binding protein protein_coding Danio_rerio
ENSMUSG00000033880 Lgals3bp lectin, galactoside-binding, soluble, 3 binding protein protein_coding Mus_musculus

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