C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587339 TRIM47-002 ENSG00000132481 9606 - 17:75874164-75878196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000587339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000587339 6.477±0.00 20.869±0.00 0.484±0.00 6.469±6.29 7.976±0.00 7.790±7.65 3.055±2.90 10.817±0.00 3.165±0.00 17.885±0.00 4.446±0.00 19.059±2.52 6.289±3.54 6.626±4.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078U CIL_00078U_0001 CGP 17:75845699-75878575
CIL_00078V CIL_00078V_0001 CGP 17:75874161-75897003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021120 Trim47-002 protein_coding Mus_musculus 0 1476
ENSMUST00000106441 Trim47-001 protein_coding Mus_musculus 0 1469
ENSMUST00000141531 Trim47-003 processed_transcript Mus_musculus 0 1042

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